Tag: zoonotic diseases

Categories : Environmental EffectsTags :

Proximity to Deforested Areas Can Increase Outbreak Risk

On By ModernMedia
Aerial view of logging activities. Photo by Pok Rie from Pexels

A new study has found that human proximity to deforested areas poses an increased risk of the outbreak of zoonotic viruses.  

This adds to a growing body of evidence that human encroachment on the natural environment is resulting in zoonotic disease outbreaks.

Deforested areas and even monocultures such as commercial forests planted by humans are linked to the outbreak of diseases, the researchers found.

The researchers explained that a forest’s healthy diverse ecosystem with a range of species, blocks and filters viruses. However, in the case of monocultures where single species of plants are cultivated, like a palm oil plantation, specialist species die off and are replaced by generalists such as rats which then spread pathogens on to humans.

“I was surprised by how clear the pattern was,” said one of the study authors, Serge Morand, of the French National Centre for Scientific Research. “We must give more consideration to the role of the forest in human health, animal health and environmental health. The message from this study is ‘don’t forget the forest’.”

Using a number of databases from sources such as the World Health Organization, the researchers analysed the relationship between changes in forest cover, plantations, population and disease around the globe.
Over 1990 to 2016, the study period covered 3884 outbreaks of 116 zoonotic diseases that crossed over into humans and 1996 outbreaks of 69 vector-borne infectious diseases, largely carried by mosquitoes, ticks or flies.

“Everyone in the field of planetary health is worried about what is happening to biodiversity, climate and public health in Brazil,” Morand emphasised. “The stress there is growing. The Amazon is near a tipping point due to climate change, which is not good at all for the world ecosystem. If we reach the tipping point, the outcomes will be very bad in terms of drought, fires and for sure in terms of disease.”

The rainforests of the Congo basin and south-east Asia, and monoculture afforestation projects around the world were also cause for concern. “Our results clearly suggest that it is not only forest clearance that is responsible for outbreaks of infectious diseases, but also reforestation or afforestation, particularly in countries outside the tropical zone,” the paper noted.

Morand’s next study involves examining forest cover with satellite imagery and exploring links with that to disease.

Source: The Guardian

Categories : COVID GeneticsTags :

Bat Coronavirus 94.5% Similar to SARS-CoV-2 Found

On By ModernMedia

Researchers in China and Australia have reported the discovery of novel bat coronaviruses with a similarity of up to 94.5% to SARS-CoV-2. 

This finding further illuminates the diversity and complex evolutionary history of these viruses. A pre-print version of the research paper is available on the bioRxiv server.

Now, Weifeng Shi from Shandong First Medical University & Shandong Academy of Medical Sciences in Taian, China and colleagues have conducted a meta-transcriptomic analysis of samples collected from 23 bat species in Yunnan province in China during 2019 and 2020.  

Using a combination of genome sequencing and sampling studies, researchers identified a number of SARS-CoV-2-related coronaviruses in wildlife species that together pointed to underestimation of the phylogenetic and genomic diversity of coronaviruses.

“Our study highlights both the remarkable diversity of bat viruses at the local scale and that relatives of SARS-CoV-2 and SARS-CoV circulate in wildlife species in a broad geographic region of Southeast Asia and southern China,” said the team.

Bats are hosts to a broad range of viruses that can infect humans, and four of the seven known human coronaviruses have zoonotic origins.  They are also host to many coronaviruses, but sometimes “intermediate” hosts such as dromedary camels (MERS-CoV) are involved in the jump to humans.

Retrospective genome sequencing and sampling studies identified a number of SARS-CoV-2-related coronaviruses in wildlife species. These included the RaTG13 virus, which is the closest known relative of SARS-CoV-2,  found in the Rhinolophus affinis bat. SARS-CoV-2-related viruses have also been identified in various other Rhinolophid bats across Asia.

“Collectively, these studies indicate that bats across a broad swathe of Asia harbour coronaviruses that are closely related to SARS-CoV-2 and that the phylogenetic and genomic diversity of these viruses has likely been underestimated,” said Shi and colleagues.

Notably, one of these novel bat coronaviruses – RpYN06 – exhibited 94.5% sequence identity to SARS-CoV-2 across the whole genome, with key similarities in certain genes. Low genopmic sequence identity in the spike gene made RpYN06 the second closest relative of SARS-CoV-2, next to RaTG13. This is far more similar than seen in other SARS-CoV-2-like viruses identified in wildlife species.

Indeed, while the other three SARS-CoV-2-related viruses identified here were almost identical in sequence, the spike protein sequences formed an independent lineage that was separated from known sarbecoviruses (a  viral subgenus or the coronaviruses that  includesSARS-CoV-2)   by a relatively long branch.

“Collectively, these results highlight the extremely high, and likely underestimated, genetic diversity of the sarbecovirus spike proteins, which likely reflects their adaptive flexibility,” wrote Shi and colleagues.

The researchers say studies have previously shown that host switching of coronaviruses among bats is a frequent occurrence.

Source: News-Medical.Net

Journal information: Shi W, et al. Identification of novel bat coronaviruses sheds light on the evolutionary origins of SARS-CoV-2 and related viruses. bioRxiv. 2021. doi: https://doi.org/10.1101/2021.03.08.434390